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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr012085.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | GRAS | ||||||||
Protein Properties | Length: 635aa MW: 69689.6 Da PI: 5.1674 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 445.8 | 2.9e-136 | 266 | 625 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 lv+ L++cAeav++++++la+al++++ la +++ +m+++a++f+eALa+r+++ +y p++ ++s + + + f+e++P+lkf+h+ta Pbr012085.1 266 LVHGLMACAEAVQQNNFNLAKALVTQIGYLAGSQAGAMRKVATFFAEALAQRIFQ----VY----PQSPI--DHSFSDMLQMHFYETCPYLKFAHFTA 353 6899**************************************************9....44....33332..23444445556*************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 NqaIle+++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+s++++ l+e+g++La++Ae+++v+fe++ +va++l+dl+ ++L++ Pbr012085.1 354 NQAILESLQGKTRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPASDNSDHLQEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLEL 451 ************************************************************************************************** PP GRAS 197 kp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +p E++aVn+v++lh+ll++++++e+ vL++vk+++P++v+vveqea+hn++ F++rf e+l+yys+lfdsle + +++ ++++++++lg+ Pbr012085.1 452 RPseVESVAVNSVFELHKLLARPGAIEK----VLSVVKQMKPEIVTVVEQEANHNGPVFMDRFNESLHYYSTLFDSLEGS---ANSRDKVMSEVYLGK 542 **88899*********************....**********************************************99...58999999******* PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +i+nvvaceg +r+erhetl +Wr+r+++a F pv+l+++a kqa++ll+ ++ +dgyrvee++g+++l W++rpL+++SaW+ Pbr012085.1 543 QICNVVACEGVDRVERHETLTQWRARFGSADFVPVHLGSNAFKQASMLLALFAgGDGYRVEENDGCMMLAWHTRPLIATSAWK 625 **********************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01129 | 1.4E-34 | 50 | 123 | No hit | No description |
Pfam | PF12041 | 2.2E-35 | 50 | 117 | IPR021914 | Transcriptional factor DELLA, N-terminal |
PROSITE profile | PS50985 | 66.224 | 240 | 604 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-133 | 266 | 625 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0042176 | Biological Process | regulation of protein catabolic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 635 aa Download sequence Send to blast |
MKGEHQTHQL NQYPPPQHPD PSMASTSAGG GFGKAKMWED ESHRIDGGMD ELLAVLGYKV 60 RSSDMAEVAQ KLEQLEEFMG CAQEDGLSQL ASDTVHYNPA DLSTWLESMI SEINLPPPNF 120 DPLMGGAVAG MQPNQQQVQL VDDPFLARGE SSITTVDFPD QRKSKSISTS PPQTVFEDCN 180 SSSSYYDFKS IPGNAVFTQT RLDSPSREPK RLKSSSGSSP SELLFNRPAA SSLPQPQQPI 240 SLPATAESSP TRPALIVDSQ ENGVRLVHGL MACAEAVQQN NFNLAKALVT QIGYLAGSQA 300 GAMRKVATFF AEALAQRIFQ VYPQSPIDHS FSDMLQMHFY ETCPYLKFAH FTANQAILES 360 LQGKTRVHVI DFSMNQGMQW PALMQALALR PGGPPAFRLT GIGPPASDNS DHLQEVGWKL 420 AQLAETIHVE FEYRGFVANS LADLDASMLE LRPSEVESVA VNSVFELHKL LARPGAIEKV 480 LSVVKQMKPE IVTVVEQEAN HNGPVFMDRF NESLHYYSTL FDSLEGSANS RDKVMSEVYL 540 GKQICNVVAC EGVDRVERHE TLTQWRARFG SADFVPVHLG SNAFKQASML LALFAGGDGY 600 RVEENDGCMM LAWHTRPLIA TSAWKPAYNS VMAH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-50 | 266 | 625 | 4 | 375 | GRAS family transcription factor containing p |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00611 | ChIP-seq | Transfer from AT2G01570 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF304103 | 0.0 | JF304103.1 Pyrus x bretschneideri cultivar Yali DELLA protein mRNA, complete cds. | |||
GenBank | KU311003 | 0.0 | KU311003.1 Pyrus pyrifolia cultivar mixueli DELLA protein GAI2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009351505.1 | 0.0 | PREDICTED: DELLA protein GAI-like | ||||
Swissprot | Q6EI05 | 0.0 | GAIPB_CUCMA; DELLA protein GAIP-B | ||||
TrEMBL | I1ZG12 | 0.0 | I1ZG12_9R | ||||
STRING | POPTR_0008s13090.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF803 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 0.0 | GRAS family protein |